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Aquatic Conservation: Marine and Freshwater Ecosystems

Wiley

Preprints posted in the last 30 days, ranked by how well they match Aquatic Conservation: Marine and Freshwater Ecosystems's content profile, based on 12 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

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Exploring the relationship between dolphins and fisheries: uncovering the spatial and temporal patterns that influence potential conflicts along Portugal's north coast

Barbieri, B.; Afonso, L.; Oliveira-Rodrigues, C.; Silva, I.; Gil, A.; Marcalo, A.; Sousa-Pinto, I.; Correia, A. M.; Valente, R.

2026-03-27 ecology 10.64898/2026.03.25.714190 medRxiv
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The north coast of mainland Portugal supports a strong dolphin presence and extensive fishing activity, increasing the likelihood of interactions, such as bycatch. This study provides an initial assessment of potential conflict areas, using automatic identification system (AIS) data from Global Fishing Watch. To this end, sighting data from the ATLANTIDA project (2021-2024) on the common dolphin (Delphinus delphis) were used to describe spatiotemporal patterns of occurrence and encounter rates, and to predict their association with fishing effort to identify and map areas of potential overlap. A generalised additive model (GAM) was then applied, integrating environmental, spatial, temporal, and fisheries-related variables to identify the main predictors of species occurrence. Common dolphins were frequently observed during the summer, with an average encounter rate of 3.662 sightings/km. This high encounter rate may be associated with factors such as sea surface temperature, diet, and purse seine fishing activity. The maps showed a spatial overlap between fishing grounds and areas of common dolphin occurrence. Fishing effort was nearly identical between locations with sightings (2.00 h/km{superscript 2}) and those without (1.62 h/km{superscript 2}), suggesting that dolphins are not actively avoiding fishing areas but may instead frequent them due to shared habitat preferences. The best-fitted GAM indicated that encounters were related to year, latitude, fishing effort, depth, sea surface temperature, and season. There was an increase in occurrence over the years and a decrease with increasing fishing effort and sea surface temperature, possibly linked to changes in prey availability, although broad confidence intervals warrant cautious interpretation. Despite some limitations encountered in this study, we believe our findings provide valuable insights into the relationship between dolphin occurrence, environmental conditions, and fishing activities in the area, establishing an important baseline for future conservation and fisheries management efforts.

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Time to Potential Collision: A Dynamic Approach To Study Vessel-Whale Close Encounters

Santos, R.; Oliveira-Rodrigues, C.; Silva, I. M.; Valente, R.; Afonso, L.; Gil, A.; Vinagre, C.; Sambolino, A.; Fernandez, M.; Alves, F.; Sousa-Pinto, I.; Correia, A. M.

2026-03-25 ecology 10.64898/2026.03.23.713354 medRxiv
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Vessel-whale collisions are a growing global concern and remain challenging to quantify. Therefore, the use of proxies, such as Close Encounters (CEs) that comprise Surprise Encounters (SEs) and Near-Miss Events (NMEs), has been proposed and widely employed to assess collision risk. To better understand this risk in the Eastern North Atlantic, where maritime traffic is intensive, this study aimed to redefine and quantify CEs, and to assess detectability-related variables that may affect CE identification. CEs were assessed using a cetacean occurrence dataset collected between 2012 and 2024 on board cargo ships and oceanographic vessels. CEs thresholds were redefined based on Time to Potential Collision (TPC), rather than distance alone (as described in literature), to allow a more dynamic, risk-based, and speed-sensitive approach. In total, 1226 sightings of whales (baleen, sperm, and beaked whales) were recorded, of which 37.4% were classified as SEs and 2.0% as NMEs. The sperm whale, Physeter macrocephalus, was the species most frequently involved in CEs (13.9% of all CEs), followed by the Cuviers beaked whale, Ziphius cavirostris (11.8%). A Generalized Additive Model was used to assess the influence of detectability-related variables (i.e., meteorological conditions, whale taxa, vessel characteristics, and Marine Mammals Observers (MMOs) experience) on TPC. Significantly lower TPC values were observed with beaked whales, cargo ships, poor visibility conditions, and less experienced MMOs. The results of this study provide an CEs assessment in this region and contribute to the ongoing efforts to standardize CE quantification, by using TPC as a metric. This work also highlights the importance of decreased speeds and the presence of experienced MMOs on board to increase detection probability and TPC, thereby potentially minimizing collision risk.

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Coral restoration alters reef soundscapes but machine learning and manual analyses suggest different recovery rates

Croasdale, E. M.; Saponari, L.; Dale, C.; Shah, N.; Williams, B.; Lamont, T. A. C.

2026-04-02 ecology 10.64898/2026.03.31.710564 medRxiv
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Coral restoration is recognised as a critical tool to mitigate pantropical degradation of reef ecosystems. Robust monitoring of restoration progress is crucial for projects to evaluate their success, improve practice, and share knowledge. However, traditional visual surveys often fail to capture the full impact of coral restoration on reef function. Therefore, we employed Passive Acoustic Monitoring (PAM) to assess whether the soundscape of a coral restoration site in the Seychelles differs from adjacent healthy and degraded reference reefs. We applied two methods of soundscape analysis: manual detection of unidentified fish sounds; and machine learning-based Uniform Manifold Approximation and Projection analysis. Results were approach-specific: the manual approach highlighted similarities in fish calls between the restoration site and the healthy reference reef, while the machine learning approach extracted broader soundscape patterns, clustering the restoration site alongside the degraded reference reef. Although this is a single-site study, these findings suggest that a) coral restoration alters reef soundscapes, though recovery time may be taxon-specific, and b) multiple metrics are needed to bridge single-taxon and broad soundscape scales. This study contributes to the evolving field of soundscape ecology in coral reef ecosystems, highlighting the utility of PAM in monitoring changes to reef function through coral restoration.

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Influence of organs, body size and growth and domoic acid depuration in the king scallop, Pecten maximus.

Le Moan, E.; Hegaret, H.; Deleglise, M.; Ambroziak, M.; Vanmaldergem, J.; Derrien, A.; Terre-Terrillon, A.; Breton, F.; Fabioux, C.; Jean, F.; Flye-Sainte-Marie, J.

2026-03-25 ecology 10.64898/2026.03.23.708139 medRxiv
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Since 1995, European fisheries of Pecten maximus have faced the presence of Pseudo-nitzschia species, which are able to produce the neurotoxin domoic acid responsible for Amnesic Shellfish Poisoning (ASP). As filter-feeders, scallops can accumulate and retain domoic acid much longer than most other bivalves, from months to years. When concentrations exceed the regulatory threshold, fisheries are closed leading to economic concern. Inter-individual variability increases the difficulty to predict the depuration dynamics. Quantifying the correlations between domoic acid depuration in P. maximus and individual physiological traits, particularly body size, could improve the understanding of contamination and depuration. We analysed toxin dynamics in organs and assessed the effects of body size and growth. This analysis was based on two datasets from an experimental and an in situ depuration monitoring of P. maximus exposed to a natural bloom of toxic P. australis. Results showed that the distribution of domoic acid shifted among organs between contamination and two months of depuration. Toxin concentrations correlated negatively with body size during contamination and after two months of depuration, but shifted to a positive correlation after 7 months of depuration. This suggested that smaller scallops both accumulate more domoic acid and depurate it more rapidly. Dilution by growth appeared to explain the inversion of the correlation between domoic acid and body size throughout depuration. These results yield useful information for modelling these mechanisms, thus providing valuable tools for scallop fishery management facing ASP. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=60 SRC="FIGDIR/small/708139v1_ufig1.gif" ALT="Figure 1"> View larger version (16K): org.highwire.dtl.DTLVardef@1fd317org.highwire.dtl.DTLVardef@15b9032org.highwire.dtl.DTLVardef@57dae8org.highwire.dtl.DTLVardef@1e4c7fc_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIExperimental and in situ datasets allowed to quantify DA proportion dynamics in organs in P. maximus C_LIO_LIDA concentration and body size are negatively correlated during contamination phase, but positively after a 7-month depuration C_LIO_LIConsidering dilution by growth is important for young scallops to assess DA depuration dynamics C_LIO_LIBoth depuration rate and dilution by growth need to be considered to model DA depuration over the whole scallop size range C_LI

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Species-specific versus community-wide assays in eDNA monitoring of European eel Anguilla anguilla: Trade-offs between detection sensitivity and the value of additional community data

Monaghan, A. I. T.; Sellers, G. S.; Griffiths, N. P.; Lawson Handley, L.; Hänfling, B.; Macarthur, J. A.; Wright, R. M.; Bolland, J. D.

2026-03-20 ecology 10.64898/2026.03.19.712641 medRxiv
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Effective monitoring of the critically endangered European eel (Anguilla anguilla) is essential for conservation planning and regulatory decision-making, particularly in heavily fragmented rivers. Environmental DNA (eDNA) methods offer sensitive alternatives to traditional surveys, but there is uncertainty around whether targeted assays or community-wide approaches are better suited to achieve monitoring objectives. We compared eDNA metabarcoding and species-specific quantitative PCR (qPCR) for detecting A. anguilla across 145 pumped catchments in the Fens, East Anglia, England. All sites were sampled once initially, and sites negative for A. anguilla were re-sampled based on metabarcoding results. This allowed comparison of detection rates from a single water sample and site-level retrospective identification of sites where qPCR could have identified A. anguilla in earlier samples. The findings were also set in the context of the wider biodiversity information generated by metabarcoding. From the initial (single) water sample, qPCR detected A. anguilla at seven more sites than metabarcoding (17 versus 10). With repeated sampling, metabarcoding detected A. anguilla at 43 sites, including all but one of the sites where qPCR detected A. anguilla, and ten sites where qPCR did not detect A. anguilla within the same number of samples. Indeed, the additional sampling effort required to detect A. anguilla with metabarcoding at sites also positive with qPCR was small relative to the overall sampling effort. Furthermore, metabarcoding additionally detected 28 non-target fish species alongside fish, amphibian and mammal species of conservation concern. Our results highlight trade-offs between target-species sensitivity and the broader ecological information provided by each method, and support metabarcoding as an effective tool for a holistic conservation approach, with the additional community data outweighing the marginally increased sensitivity of qPCR.

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An agent-based approach for designing effective protection

Slooten, E.; Myers, L. S.; Nabe-Nielsen, J.

2026-04-07 ecology 10.64898/2026.04.03.716393 medRxiv
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We developed an agent-based model (ABM) to assess how area-based controls on fishing methods can reduce fishing mortality and population declines. The model incorporates the behavior and distributions of dolphins and fishing vessels, and realistic displacement of fishing effort when protection is extended. Our case study is New Zealand dolphin - Hectors and Maui dolphins. The model was designed and calibrated using pattern-oriented modeling. Our results show that mortality due to entanglement in fishing gears has been reduced thanks to a gradual increase in dolphin protection. However, current protection is not as effective as previously thought, and scarce populations are negatively affected by Allee effects. Neither national nor international goals for reducing bycatch are met by current dolphin protection. The IUCN has recommended banning gillnet and trawl fisheries in New Zealand waters < 100m deep. For most New Zealand dolphin populations, this would be effective in achieving national and international goals for reducing bycatch. Only two populations would require additional protection. This modelling approach is also suitable for assessing impacts of bycatch and ship strikes for other marine species, making it suitable for informing management decisions in many regions.

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Status of Round Goby Invasion Fronts in New York and Quebec: Implications for Lake Champlain

George, S. D.; Diebboll, H. L.; Pearson, S. H.; Goldsmit, J.; Drouin, A.; Vachon, N.; Cote, G.; Daudelin, S.; Bartron, M. L.; Modley, M. D.; Littrell, K. A.; Getchell, R. G.; Fiorentino, R. J.; Sadekoski, T. R.; Finkelstein, J. S.; Darling, M. J.; Parent, G. J.; Atkins, L. M.

2026-03-25 ecology 10.64898/2026.03.23.712452 medRxiv
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Invasive round goby Neogobius melanostomus have advanced eastward through the state of New York and provinces of Ontario and Quebec over the past two decades and are approaching Lake Champlain, one of the largest lakes in North America. This manuscript describes international efforts to monitor round goby populations during 2021-2025 on (a) the southern approach to Lake Champlain via the Hudson River and Champlain Canal, and (b) the northern approach to Lake Champlain via the Saint Lawrence River and Richelieu River. Monitoring utilized environmental DNA (eDNA), backpack electrofishing, beach seining, benthic trawling, and viral hemorrhagic septicemia virus (VHSV) testing. In the Champlain Canal, round goby were captured as far north as the downstream side of the C1 dam (97 kilometers [km] from Lake Champlain) while eDNA detections occurred as far north as the upstream side of the C2 dam (90 km from Lake Champlain). In the Richelieu River, round goby were captured as far south as Saint-Marc-sur-Richelieu (82 km from Lake Champlain) while the southern-most eDNA detections occurred near the Canadian side of the international border (4 km from Lake Champlain). Water temperature influenced habitat usage of round goby in the Champlain Canal, with catch rates in near-shore areas declining at < 10 {degrees}C. All VHSV test results were non-detections at the mouth of the Richelieu River, while one positive and two inconclusive results occurred along the Champlain Canal. Together, these data have informed multiple mitigation measures and have implications for management of aquatic invasive species across North America.

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Integrating conventional tagging and acoustic telemetry improves estimates of post-release survival in a highly targeted reef fish

Hyman, A. C.; Collins, A.; Ramsay, C.; Allen, M. S.; Wilms, S.; Barbieri, L.; Frazer, T. K.

2026-03-20 ecology 10.64898/2026.03.16.711647 medRxiv
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Accurate estimation of post-release survival is fundamental to fisheries stock assessment and effective management. Conventional tag-return studies and acoustic telemetry are commonly used to estimate this probability, yet each approach has limitations when applied independently. Using gag (Mycteroperca microlepis) as a case study, we integrated data from a large-scale conventional tagging program and an acoustic telemetry experiment within a discrete-time statistical modeling framework that links relative recapture risk with telemetry-derived fate. This approach enabled estimation of post-release survival across a broad gradient of capture depths representative of recreational fishing conditions. Estimated survival was high in shallow waters ({approx}97%) but declined with increasing capture depth, consistent with depth-related barotrauma. Applying model predictions to depth distributions from the recreational fishery yielded annual and monthly post-release survival probabilities. Annual estimates were consistent with values assumed in recent stock assessments, while monthly values highlighted seasonal patterns potentially relevant for management. This integrated framework advances post-release survival estimation by combining the extensive sample sizes and environmental coverage characteristic of conventional tagging data with the direct fate observations provided by acoustic telemetry, and offers a transferable approach for other highly targeted fisheries.

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Comparative food-web analysis of bluefin tuna spawning habitats in the eastern Indian Ocean and Gulf of Mexico

Stukel, M. R.; Landry, M. R.; Decima, M.; Fender, C. K.; Kranz, S. A.; Laiz-Carrion, R. L.; Malca, E.; QUINTANILLA, J. M.; Selph, K. E.; Swalethorp, R.; Yingling, N.

2026-03-20 ecology 10.64898/2026.03.18.711569 medRxiv
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Using linear inverse ecosystem modeling as a data assimilation tool, we compare spawning grounds of Atlantic and Southern Bluefin Tuna (ABT and SBT, respectively) based on results from field campaigns in the Gulf of Mexico (GoM) and eastern Indian Ocean off northwest Australia (Argo Basin). Both regions are warm, stratified, low-nutrient waters dominated by cyanobacteria (Prochlorococcus). Despite these similarities, the Argo Basin is more productive, with [~]1.5X higher net primary production and nearly 2X higher production of top trophic levels in the model (tuna larvae, planktivorous fish, and predatory gelatinous zooplankton). Higher primary production in the Argo Basin is mainly driven by higher N2 fixation and storm mixing of new nutrients in the upper and lower euphotic zone, respectively. Increased ecosystem efficiency (secondary production of top trophic levels / primary production) results from differences in plankton food web organization. In the GoM, protistan zooplankton are the direct consumers of nearly all phytoplankton production. In contrast, higher rates of herbivory by crustaceans feeding on nanophytoplankton combines with a higher impact of appendicularians on cyanobacteria to convert plankton production into larval tuna prey more efficiently in the Argo Basin. Despite similarities in the proportions of phytoplankton production mediated by cyanobacteria and other picoplankton in both systems, food web pathways to larval tuna and other planktivorous fish are substantially shorter in the Argo Basin. Our results highlight the impact of distinct zooplankton ecological niches on ecosystem efficiency and suggest a need for better inclusion of plankton food-web structure in models simulating climate impacts on fisheries production. HIGHLIGHTSO_LIDeveloped food web models of tuna spawning habitat (Indian Ocean & Gulf of Mexico) C_LIO_LISpawning habitats in the Argo Basin and Gulf of Mexico (GoM) are both oligotrophic C_LIO_LIArgo Basin had higher net primary production in part as a result of nitrogen fixation C_LIO_LIArgo Basin had higher rates of direct herbivory by metazoan zooplankton C_LIO_LIThis resulted in greater ecosystem efficiency in the Argo Basin. C_LI

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Semen collection, short term storage, and cryopreservation in the Texas horned lizard (Phrynosoma cornutum)

Julien, A. R.; Griffioen, J. A.; Perry, S. M.; Doege, R.; Burger, I. J.; Barber, D. R.

2026-04-06 zoology 10.64898/2026.04.03.716302 medRxiv
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As global reptile populations continue to decline, improving reproductive success in managed populations of listed species, such as Phrynosoma cornutum (the Texas horned lizard) has become increasingly critical for species survival. One understudied area of reproductive research in reptile species is gamete collection and storage, a crucial component for maintaining genetic diversity. In Texas, semen was collected from wild P. cornutum (n = 20) in June 2025. Semen collection was performed via electroejaculation (EEJ) under alfaxalone anesthesia. Prior to semen collection, snout-vent-lengths (SVL) and weights were recorded and testes measurements were taken using a portable ultrasound. Average sperm motility and concentration across all lizards was 83.7% and 85.7 x 106 sperm/mL, respectively. While lizards with longer SVLs had higher sperm motility, weight and testis size did not affect sperm parameters. Samples were extended in INRA96 and divided for use in cold-storage longevity or cryopreservation trials. Samples under cold-storage conditions were assessed for motility daily for 10 days. Motility was not significantly reduced until 48 hours post-collection and maintained 19% motility at day 10. For cryopreservation, samples were diluted 1:1 in INRAFreeze cryopreservation media and frozen in liquid nitrogen, then immediately thawed. Average post-thaw sperm motility was 13.9%, with the highest post-thaw motility recorded at 38.2%. This is the first report of semen storage and cryopreservation in Phrynosoma and provides valuable insight into semen storage potential in reptile species.

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Grazing and mowing enhance aquatic macroinvertebrate diversity of small artificial ponds in eutrophic landscape

Petruzelova, J.; Petruzela, J.; Cerna, A.; Kotasova Adamkova, M.

2026-03-26 ecology 10.64898/2026.03.24.713891 medRxiv
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Artificial pond construction is widely used in wetland restoration, yet biodiversity outcomes depend strongly on design and subsequent management. We tested how different regimes (grazing, mowing, and no management) influence habitat structure, water conditions, and aquatic macroinvertebrate diversity in newly excavated experimental ponds within an eutrophic wetland in South Moravia (Czechia). Across four focal groups (Mollusca, Odonata, Coleoptera, Heteroptera), we observed rapid colonisation of the newly built ponds. Species richness and densities rose during early development, dropped after drying events, and then partially recovered, indicating repeated "resetting" of communities under fluctuating hydrology. Periodic drying also prevented fish stock establishment. Management significantly affected species composition and both grazed and mowed ponds displayed higher densities (abundances) than controls, but differed only slightly in terms of species richness. The grazed ponds were characterised by high sunlight exposure, reduced reed dominance, and trampling-generated high littoral heterogeneity. These ponds showed highest numbers of taxa adapted to shallow and warm waterbodies, muddy substrate, semiaquatic microhabitats, or newly emerged and disturbed habitats. The mowed ponds promoted dense submergent vegetation, supporting Odonata representation and other taxa requiring aquatic vegetation. The control ponds remained highly shaded by high-grown reed, organic-matter rich, hosting a set of taxa tolerant of low-light, low-oxygen conditions. At the wetland scale, multiple small ponds increased overall diversity through high between-pond heterogeneity. Our results highlight that pond construction alone is insufficient for wetland restoration: follow-up long-term management regimes, especially extensive grazing, can rapidly generate structural heterogeneity and sustain diverse aquatic invertebrate assemblages in eutrophic wetlands.

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Robustness and management performance of MSY reference points derived from the hockey-stick stock-recruitment model under structural uncertainty

Ichinokawa, M.; Okamura, H.

2026-03-30 ecology 10.64898/2026.03.27.714336 medRxiv
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The hockey-stick (HS) stock recruitment relationship (SRR) has been widely used as an empirical alternative to conventional SRRs such as the Beverton-Holt (BH) and Ricker (RI) models. However, the management performance and risks associated with estimating maximum-sustainable-yield (MSY) reference points (RPs) based on HS remain insufficiently understood. This study first defines deterministic and stochastic MSY RPs under the HS model and provides an overview of their properties. We then conduct simulation experiments to investigate the bias and management consequences that arise when MSY RPs are estimated from the HS model (HS-derived MSY RPs) rather than from the true SRR (e.g., BH) across a range of biological and stochastic parameters, with particular focus on scenarios with insufficient data contrast. Our results show that HS-derived MSY RPs tend to exhibit higher bias but lower variance than MSY RPs derived from the true SRR. Management strategy evaluation simulations further reveal that management procedures combining HS-derived MSY RPs with adaptive model learning and some precautionary measures gradually reduce this bias and achieve average spawning biomass and yield that are comparable to those obtained under management based on the true BH SRR. We also show that the management effectiveness of the precautionary measures depends on life-history traits and recruitment variability. These findings indicate that although HS-derived MSY RPs may be biased and require cautious use, combining them with appropriate precautionary measures allows management to remain robust while limiting variability and yield losses. This broadens the range of management options that are available for supporting sustainable fisheries management.

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Quantifying catch inequality in recreational fisheries: a case study with California steelhead (Oncorhynchus mykiss)

Sanchez, S. R.; Schneider, C.; Fangue, N. A.; Lusardi, R. A.; Rypel, A. L.

2026-03-19 ecology 10.64898/2026.03.17.712454 medRxiv
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Catch inequality--the disproportionate distribution of catch across anglers-- is a fundamental but overlooked driver of recreational fisheries dynamics. Here, we use 11 years (2012-2022) of compulsory angler report cards to characterize long-term catch dynamics in the specialized recreational steelhead (Oncorhynchus mykiss) fishery in California, U.S.A. Spatialized catch data reveal the fishery is principally supported by wild fish, despite evidence of widespread hatchery straying. California steelhead appear to represent the most catch-unequal recreational fishery studied yet, exhibiting a statewide Gini coefficient of 0.81. Across basins, inequality varies substantially but remains relatively stable over time and flow conditions; high inequality is primarily driven by significant proportions of zero-catch anglers. We find the relationship between sample size and inequality measures is especially influential in fisheries data. Hence, we develop a three-prong approach for identifying minimal sample sizes required for robust Gini estimation. Across basins and years, an average minimum of 77 report cards were required for the present fishery. Collectively, these findings demonstrate the necessity of considering catch inequality in fisheries management, particularly when utilizing angler data. Graphical AbstractN.a.

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Into new depths: climate-driven habitat expansion of the endangered skate Dipturus chilensis (Chondrichthyes, Rajiformes)

Villafana, J.; Almendras, D.; Gonzalez-Aragon, D.; Concha, F.; Guzman-Castellanos, A.; Contreras, I.; Buldrini, K.; Oyanadel-Urbina, P.; Sandoval, C.; Miranda, B.; Mazo, G.; Cardenas, F.; Valdivia, M.; Pequeno, G.; Lara, C.; Rivadeneira, M.

2026-03-27 ecology 10.64898/2026.03.26.714520 medRxiv
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The yellownose skate (Dipturus chilensis) is an endangered skate with a narrow distribution in the southeastern Pacific, facing intense fishing pressure and potential climate threats. Using a species distribution model, we projected the current and future distribution of D. chilensis under contrasting climate change scenarios (SSP1-2.6, SSP2-4.5, and SSP5-8.5) for mid-century (2050) and end-of-century (2100). Our models, which demonstrated robust predictive performance significantly better than random expectations, identified maximum temperature and minimum oxygen as the primary environmental drivers of habitat suitability. Projections revealed a consistent poleward range shift towards the Channels and Fjords of Southern Chile ecoregion across all scenarios. While localized habitat loss was projected in Central Chile and Araucanian ecoregions, particularly under high emissions (SSP5-8.5), these losses were outweighed by southern expansions, leading to a net increase in total suitable habitat by 2100. These findings underscore the critical need for climate-adaptive management strategies, including the protection of emerging southern refugia and dynamic fisheries regulations, to ensure the long-term persistence of D. chilensis.

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Reassessing display behavior from Bels et al. (2025) given the complexity of anthropogenic hybridization and intraspecific diversity in Iguana iguana

van den Burg, M. P.; Thibaudier, J.

2026-03-23 zoology 10.64898/2026.03.19.713079 medRxiv
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Understanding behavioral differences between non-native and closely related endangered species could be important to aid conservation management. In volume 169 of Zoology, Bels et al. (2025) reported on their comparison of display-action-patterns (DAP) between native Iguana delicatissima and non-native iguanas present on islands of the Guadeloupe Archipelago in the Caribbean Lesser Antilles. Here, we address conceptual and methodological concerns about their work and reanalyze their data given our proposed corrections, primarily a literature-informed adjustment of their "species" category. We additionally utilize online videos from South American mainland I. iguana populations, from where the non-native iguanas in the Guadeloupe Archipelago originate, to better understand the different DAPs between native and non-native iguanas in the Guadeloupe Archipelago. Significant differences in DAP characteristics among "species" categories (native I. delicatissima, non-native iguanas, and hybrids) show that Bels et al. (2025) oversimplified their data analyses by merging all non-native populations into one group. This result indicates the presence of behavioral variation among subpopulations within widely hybridizing iguanid populations, which has been poorly studied. Additionally, videos from mainland populations across two major mitochondrial clades of Iguana iguana show that non-native iguanas on Guadeloupe retained DAP characteristics of those populations from which they originate. We discuss these findings in light of the proposed hypotheses put forward by Bels et al. (2025), of which two can be excluded. Overall, our reanalysis shows that studies focusing on characteristics within settings of complex hybridization in diverse species should acknowledge this complexity.

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Intertidal Gastropods (Gastropoda: Mollusca): Insights on diversity and distribution in the Mumbai Metropolitan Region, India

Ansari, R. M.; Patade, P.; Modi, S.

2026-03-30 zoology 10.1101/2025.11.20.689409 medRxiv
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Marine biodiversity documentation from the Mumbai Metropolitan Region (MMR) remains neglected despite the region having diversity of marine coastal habitats. The regions intertidal is one such habitat where species documentation remained heavily deficient due to lack of assessments and general apathy towards the habitat. This study addresses the issue of data deficiency of one of the largest taxa, Gastropoda through a decade long citizen science project, Marine Life of Mumbai. There exist large gaps in taxonomic research that have led to inconsistencies in species identification and inadequate ecosystem representation. This study addresses these issues by focusing on one of the largest taxa, the Molluscan class Gastropoda within the MMR. We present the spatial distribution of gastropod assemblages from 28 rocky, sandy and muddy intertidal sites within the Mumbai Metropolitan Region, on west coast of India. A total of 163 species were recorded from 2164 observations of marine gastropods. Among these, 29 species, 34 genera and one family Limapontiidae are new records for the region. Additionally, this study reports rediscoveries of 7 species from their type locality, with 5 species of Heterobranchs recorded after 78 years: one species from Neogastropoda, Lataxiena bombayana, after 131 years and one from Siphonariida, Siphonaria bassiensis after 31 years, from their type locality. These species are herein illustrated with detailed morphological descriptions and their local distribution on 28 sites in the Mumbai Metropolitan Region. Through this study we elucidate that the citizen science efforts and the subsequent taxonomic analysis provide an effective and low-cost method for filling data gaps from large, understudied geographical areas.

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Socotra Cormorants in the Arabian Gulf represent a large, but isolated population with low genetic diversity

Almansoori, N. M.; Razali, H.; Muzaffar, S. B.; Chabanne, D. B. H.; Natoli, A.; Almusallami, M.; Naser, H.; Khamis, A.; Al Harthi, F.; Aldhaheri, L. S. R.; Alaleeli, M. M. B.; Al Diwani, F. M.; Manlik, O.

2026-04-03 ecology 10.64898/2026.04.01.712451 medRxiv
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The Socotra Cormorant (Phalacrocorax nigrogularis) is a threatened seabird endemic to the coastal areas of the Arabian Gulf and the Arabian Sea, two regions separated by the Strait of Hormuz. Conserving threatened species requires clear delineation of population boundaries and the evaluation of genetic diversity. However, information on population structure and genetic variation, necessary for such an assessment, is lacking for the Socotra Cormorants. In this study, we assessed population structure and genetic diversity of Socotra Cormorants using two contrasting genetic markers: (1) maternally inherited mtDNA cytochrome oxidase 1 (COI) and (2) a nuclear non-coding region, {beta}-fibrinogen intron 7 (FIB7). A total of 279 individuals were sampled from four colonies in the Arabian Gulf and one colony on Hasikiyah Island in the Arabian Sea. Findings based on COI-variation suggest that the Arabian Gulf colonies represent one large population with extensive gene flow between Gulf colonies--except for the most distant pair of colonies--but isolated from Hasikiyah in the Arabian Sea. COI-variation indicated significant differentiation between the colonies inside the Gulf and the Hasikiyah colony. This is consistent with the reported distribution patterns, and may reflect phylogeographic processes of the region. The Gulf population showed substantially lower COI-diversity, with significantly lower nucleotide and haplotype diversity compared to Hasikiyah. In contrast, FIB7 results indicated extensive connectivity among colonies, with no detectable population structure or significant differences between the Gulf population and Hasikiyah. This study presents the first characterization of population structure and genetic diversity of Socotra Cormorants. The low genetic diversity coupled with relative isolation of the Gulf Socotra Cormorants raises conservation concerns regarding their long-term viability by potentially reducing fitness and eroding their evolutionary capacity to adapt to environmental change. LAY SUMMARYO_LIThe Socotra Cormorant is a threatened seabird found in the Arabian Gulf and Arabian Sea, but little was previously known about its population structure and genetic diversity. C_LIO_LIWe analyzed 279 birds from five nesting colonies (4 in the Gulf and 1 in the Arabian Sea), using two genetic markers to assess population connectivity and variation. C_LIO_LIWe found that the Socotra cormorants inside the Gulf appear to form a large, genetically isolated population with relatively low genetic diversity. C_LIO_LIThis is the first study that evaluates population structure and genetic diversity of this endangered seabird. C_LIO_LIThis is important information for the conservation of the Gulf Socotra cormorants because low genetic diversity, coupled with relative isolation, is associated with reduced fitness, and suggests that they may have a lower chance to adapt to environmental changes. C_LI

18
From Past to Future: The Impact of Climate Change on a Mediterranean Lizard

Kuyucu, A. C.

2026-03-27 ecology 10.64898/2026.03.26.714419 medRxiv
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1.1%
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Mediterranean Basin, one of the most important hot spots for reptiles, is also expected to experience significant impacts with climate change, posing a severe risk for the herpetofauna of the region. This study uses the snake-eyed lizard Ophisops elegans as a model organism to investigate the potential impacts of past and future climate change on reptile distributions in the region. An ecological niche model (ENM) was developed with the Maxent algorithm, with location points from GBIF and bioclimatic variables from the CHELSA dataset, then projected onto past LGM ([~]21 kya) and future (2071-2100 SSP3-7.0 and SSP5-8.5) scenarios. Results show that the present-day distribution of O. elegans is primarily driven by temperature seasonality and precipitation, indicating a preference for coastal Mediterranean climates with dry summers. The LGM projection suggests a fragmented and contracted range, confined to coastal refugia around the Mediterranean and Caspian Seas. Future projections for 2071-2100 show consistent and alarming contraction of suitable habitats under both SSP scenarios. In conclusion these findings indicate that O. elegans is vulnerable to significant habitat loss under projected climate change. This severe impact on a wide-spread species implies that the herpetofauna of the Mediterranean Basin may face a significant threat in future.

19
Feeding ecology and ecological risks of the invasive fish Coreoperca herzi revealed by gut content DNA and environmental DNA metabarcoding

Tsuji, S.; Hibino, Y.; Morimoto, S.; Miuchi, Y.; Watanabe, K.

2026-03-24 ecology 10.64898/2026.03.20.713311 medRxiv
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1.1%
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Understanding the dietary patterns of introduced predators is essential for assessing their impacts on freshwater ecosystems. Here, we investigated the feeding ecology of the invasive Korean perch (Coreoperca herzi) introduced to the Oyodo River system, Japan, by integrating gut content DNA metabarcoding and environmental DNA (eDNA) metabarcoding. Fifty specimens were collected, and prey taxa were identified using metabarcoding targeting fish, aquatic insects, and crustaceans. In parallel, eDNA metabarcoding of habitat water samples was used to assess prey availability and selectivity. The results revealed that the Korean perch prey extensively on aquatic insects and fish. Aquatic insect prey were dominated by epilithic clinger taxa inhabiting stone surfaces, particularly mayflies, suggesting visual-mediated prey selection. Fish predation was frequently detected even in small individuals (<100 mm SL), in contrast to previous studies based on conventional methods, indicating that piscivory begins early and ontogenetic dietary shifts are not pronounced. Furthermore, quantitative fish eDNA analysis showed a positive relationship between eDNA concentrations of prey species and predation frequency, indicating opportunistic feeding on abundant, size-accessible prey. By applying two metabarcoding approaches, this study provides an integrated assessment of prey utilisation and environmental context, highlighting ecological risks posed by the Korean perch to freshwater communities in Japan.

20
Forensic Identification of Confiscated Helmeted Hornbill (Rhinoplax vigil) Casques and Implications for Individual Quantification in Wildlife Crimes

Shen, Y.; He, K.; Wang, W.; Huang, L.; Chen, J.

2026-04-06 zoology 10.64898/2026.04.02.715475 medRxiv
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0.9%
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In wildlife forensic practice, species identification and estimation of the Minimum Number of Individuals (MNI) for highly processed specimens have long relied on weight-based conversion methods, which may result in underestimation of the number of individuals involved in a case. Focusing on confiscated casque products of the helmeted hornbill (Rhinoplax vigil), this study combines macroscopic morphological examination with mitochondrial DNA barcoding (16S rRNA, COI, and Cytb) to explore a more robust approach for individual quantification. The results demonstrate that the conventional "weight-based" approach overlooks critical biological information contained in anatomical structures and cannot accurately reflect the actual number of individuals involved. Based on this, we propose an anatomy-based criterion centered on the principle of structural uniqueness: specimens retaining biologically unique beak or casque structures should be directly assigned to a single individual, whereas weight-based estimation should only be applied when original anatomical features are entirely absent. In addition, considering material loss during processing, we propose approximately 85 g as a reference threshold for estimating the number of individuals in heavily processed solid casque products. This approach improves the scientific rigor and accuracy of forensic identification and provides reliable technical support for the conviction, sentencing, and law enforcement of wildlife trafficking cases involving helmeted hornbill and other endangered species.