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Aquatic Conservation: Marine and Freshwater Ecosystems

Wiley

Preprints posted in the last 30 days, ranked by how well they match Aquatic Conservation: Marine and Freshwater Ecosystems's content profile, based on 12 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

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Northward expansion of Rugulopteryx okamurae (Dictyotales, Ochrophyta) in the southeastern Iberian Peninsula: first record in Calpe (Comunitat Valenciana)

RODRIGUEZ-GARCIA, E.; FERNANDEZ DEL CAMPO, J.; DOBSON, J. Y.; FONFRIA, E. S.; BORDEHORE, C.; PENA-MARTIN, C.

2026-07-11 ecology 10.64898/2026.07.07.736054 medRxiv
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The non-indigenous brown macroalga Rugulopteryx okamurae has emerged as one of the most aggressive marine invaders in European waters, deeply altering benthic communities and causing severe socioeconomic impacts. While its expansion has been extensively documented along the southern Iberian Peninsula, understanding the dynamics of its northward range expansion along the Spanish Mediterranean coast remains critical for coastal management. This study documents the first formal record of R. okamurae in Calpe (Alicante), representing its current northernmost distribution limit within the Comunitat Valenciana. Sampling was conducted through an initial opportunistic scuba diving observation along the surrounding waters of the Penyal dIfac Natural Park, followed by targeted underwater surveys and an ad hoc inspection of commercial bottom-trawling nets drying at the port of Calpe during June 2026. Morphological and anatomical identification was confirmed through cross-sections of the thallus under optical microscopy, revealing the presence of both the thick and intermediate morphotypes of the species. The collected specimens were found either entangled within a native photophilic algal canopy in shallow waters or recovered from deeper offshore fishing grounds. Given the absence of records in the area during 2023-2025 surveys, these findings suggest either a very recent front-wave colonization event or a contribution from nearby, yet undetected, established patches, driven by secondary local dispersal mechanisms such as drifting fragments and explicitly highlighting commercial fishing activities as an active vector. Furthermore, considering that the species was recorded within a marine protected area and deeper environments, these results highlight a potential ecological threat to local benthic ecosystems, emphasizing the urgent need f or competent authorities to implement spatiotemporal monitoring and public awareness campaigns to prevent the definitive establishment of this invader.

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Chronicle of a Death Foretold: The Ecological Collapse of Sakumo Lagoon, Ghana

Akwetey, M. F. A.; Lamptey, E.; Abrokwah, S.; Aheto, D. W.; Mensah, P. K.; Okyere, I.; Akintola, S. L.; Pauly, D.

2026-07-15 ecology 10.64898/2026.07.14.738434 medRxiv
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Sakumo Lagoon, a small (1 km2) semi-open coastal lagoon in Ghana, lies between the cities of Accra and Tema. The lagoon and its surrounding wetland were designated a Ramsar Site in 1992, mainly because it served as a refuge for 66 local and migratory bird species. Its ecology, and the biology of its major fish species, notably the blackchin tilapia (Sarotherodon melanotheron) were thoroughly studied in 1971, when the lagoon was a diverse, mainly brackish ecosystem supporting a traditionally and well-managed fishery. In 2016-2017, another study found the lagoon mostly covered by floating vegetation and plastic waste. Finally, in 2024, a visual survey established that the floating vegetation had been almost completely replaced by terrestrial plants, with only a few square meters of garbage-strewn water in front of a culvert connecting the lagoon to the open sea. Several lagoons along the coast of Ghana have been similarly lost to urban sprawl and its various forms of pollution, but Sakumo Lagoon is a Ramsar Site, and its imminent disappearance should not remain undocumented.

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Five Decades of Rariphotic Research: A Systematic Reviewof Trends, Biases, and Future Directions

Haim, A.; Eyal, G.

2026-07-08 zoology 10.64898/2026.07.07.736978 medRxiv
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The rariphotic zone, typically spanning depths of approximately 130 to 300 meters, represents a key transition between light-dependent coral reef ecosystems and the aphotic deep sea. Despite its potential ecological importance, including its proposed role as a refuge for species exposed to climate-driven stress, rariphotic ecosystems remain poorly understood. In this study, we conducted a systematic review and synthesis of the scientific literature on these habitats from 1970 to 2025. Following the PRISMA 2020 protocol, we analyzed 185 studies to characterize the historical development of research, identify geographic and methodological biases, and assess shifts in research priorities over five decades.Our results show a marked increase in research effort over the last decade, driven in part by advances in underwater technologies such as Remotely Operated Vehicles (ROVs), Human Occupied Vehicles (HOVs), and Baited Remote Underwater Video Station (BRUVS). However, this growth remains uneven, with persistent biases toward benthic rather than pelagic studies and a strong concentration of research in geographically accessible regions. Multivariate analyses of research novelty indicate that technological innovation and the formal recognition of the rariphotic zone in 2018 corresponded with major structural shifts in literature. Although the rariphotic zone is now increasingly recognized as an ecologically distinct component of the reef continuum, it remains underrepresented in ecological theory and conservation frameworks. Future research should move beyond descriptive taxonomic mapping toward integrative, data-driven functional ecology, with particular emphasis on long-term monitoring and depth-stratified connectivity.

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Smolt migration in relation to latitude, season and migratory distance

Berry, M.; Austad, B.; Aarestrup, K.; Davidsen, J. G.; Nevoux, M.; Alexandre, C. M.; Silva, S. S.; Stevens, J. R.; King, R. A.; Thorstad, E. B.; Höjesjö, J.

2026-06-23 ecology 10.64898/2026.06.20.733518 medRxiv
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Downstream migration and sea entry are periods of high mortality for sea trout smolts and migration timing is a critical aspect of survival. We aimed to investigate migration timing of PIT-tagged sea trout smolts across a latitudinal gradient in five freshwater systems across Europe: Norway, Sweden, Denmark, France and Portugal. In two systems, smolt migration was further examined to assess a) differences in sex, body size and condition between autumn and spring migrants; b) the influence of spatial origin within the stream; and c) relationships between individual body size and migration date. Tagged smolts were not detected migrating in the Portuguese watershed. Spring migration timing differed significantly between watersheds in Norway, Sweden, Denmark and France. Generally, there was a trend of earlier migration at lower latitudes. Autumn vs spring migration was examined in Gudso-Denmark. Autumn migrants were larger in both length and mass, with no differences in sex ratios or body condition. Fish originating from an upstream site were more likely to migrate in the autumn compared to the spring and vice versa. Size dependent migration was found in the Swedish system, Haga [a]-Sweden, with larger individuals migrating earlier in the spring than smaller individuals. Outward-migrating smolts were also more likely to originate from a downstream site than an upstream site. Overall, these results show both large-scale geographic and fine-scale individual influences on migration timing. Given that climate change may have large impacts on migration patterns in sea trout, understanding variability in migratory patterns across a latitudinal gradient is an important tool for predicting responses to environmental changes.

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Cetacean Mammals of the Black and Azov Seas as Indicators of Habitat Quality via Stacked Species Distribution Models

Tytar, V.; Fedorenko, L.

2026-07-08 ecology 10.64898/2026.07.07.736995 medRxiv
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Habitat degradation and biodiversity loss in the Black and Azov Seas necessitate improved tools for spatially explicit conservation planning. We employed stacked species distribution modelling (SSDM) to assess habitat quality for the three resident cetacean species, the common dolphin (Delphinus delphis ponticus), the bottlenose dolphin (Tursiops truncatus ponticus), and the harbour porpoise (Phocoena phocoena relicta), which serve as apex predators and indicators of ecosystem health. Occurrence data were compiled from the Global Biodiversity Information Facility (GBIF), and ensemble species distribution models (ESDMs) were constructed using nine algorithms within the SSDM framework, with eight environmental predictors extracted from Bio-ORACLE v3.0. Individual ESDMs demonstrated excellent predictive performance (AUC: from 0.82 to 0.83; TSS: from 0.65 to 0.67; prop.correct: from 0.82 to 0.83). However, the initial continuous stacking method (pSSDM) yielded low community-level prediction success (0.36), prompting evaluation of three correction approaches. The Probability Ranking Rule (PRR) substantially improved performance (prediction.success = 0.459, sensitivity = 0.704, Jaccard = 0.465), effectively mitigating the overprediction bias inherent in stacked models. Species richness mapping identified multi-species hotspots along the southwestern Black Sea shelf, the Crimean coast, the Kerch Strait, and parts of the eastern coast, while the deep central basin exhibited the lowest richness. Variable importance ranking revealed bathymetry as the primary community-level driver (41.2%), followed by dissolved oxygen (13.8%), sea surface temperature (11.9%), and salinity (10.4%). Species-specific importance patterns confirmed ecological niche segregation, with common dolphins favouring deeper offshore waters and bottlenose dolphins and harbour porpoises associated with shallower shelf environments. The moderate richness observed in the highly productive northwestern shelf, despite high nutrient inputs, may reflect a combination of natural factors (elevated turbidity, reduced salinity) and anthropogenic pressures (fisheries bycatch, shipping, coastal development, and military activity) that limit species co-occurrence. Our findings demonstrate that PRR-corrected SSDM provides a robust framework for mapping cetacean habitat quality and identifying conservation priorities in the Black and Azov Seas, offering an evidence-based tool to inform ecosystem-based management in this ecologically unique and increasingly pressured marine region.

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Biodiversity knowledge and conservation shortfalls in Rivulidae fishes

Costa, J. H. A. d.; Guedes, G. H. S.

2026-07-06 ecology 10.64898/2026.07.04.736495 medRxiv
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The biodiversity crisis is exacerbated by persistent gaps in taxonomic, geographic, and conservation knowledge. This study provides a comprehensive assessment of Linnean, Wallacean, and conservation shortfalls in Rivulidae (Cyprinodontiformes), one of the most diverse families of Neotropical freshwater fishes. To this end, an extensive dataset was compiled, comprising 494 valid species, 51 synonyms, 3,419 occurrence records, and information on life cycle, distribution, and conservation status. The Linnean shortfall remains open: after 1975, the rate of species description increased sharply, and estimates indicate that 103 species remain undescribed (95% CI: 53-212). The year of species description was influenced by detectability and accessibility factors, with larger species, more widely distributed species, and species occurring in more densely populated areas being described earlier. The Wallacean shortfall was broad and spatially uneven: only 5.34% of the region was considered adequately sampled. The conservation shortfall was also substantial: 179 species are threatened with extinction, 69 species remain Not Evaluated, and 62 are Data Deficient. The mean time between taxonomic description and first IUCN extinction-risk assessment was 25.7 years. Moreover, 59.9% of species have no records within protected areas, including 69.3% of threatened species. These findings synthesize an urgent challenge: biodiversity knowledge and conservation shortfalls must be overcome simultaneously to protect species that are still being discovered, remain poorly documented spatially, and are restricted to habitats under intense anthropogenic pressure. The conservation of Rivulidae cannot wait for complete knowledge; action amid uncertainty is necessary to prevent both known and unknown species from disappearing.

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Optimizing Light Traps for Littoral Mysids and Mesopredatory Fish in the Baltic Sea: Environmental Drivers and Seasonal Monitoring Efficacy

Ogonowski, M.

2026-07-02 ecology 10.64898/2026.07.01.735747 medRxiv
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Littoral mysids facilitate benthic-pelagic coupling through horizontal migration, yet quantitative monitoring in structurally complex habitats remains methodologically challenged where traditional active gears fail. We evaluated the efficacy of standardized light traps for monitoring littoral mysids (Neomysis integer, Praunus flexuosus) and mesopredatory three-spined sticklebacks (Gasterosteus aculeatus) in the northern Baltic proper, Baltic Sea. Using a paired experimental design with predator-exclusion and unmodified traps, alongside concurrent passive benthic trapping, we assessed abiotic drivers affecting catchability, biotic interactions, and statistical power to monitor changes in population size over time. Results indicated significant biotic interference: unmodified traps attracted high densities of sticklebacks, which reduced mysid catches by approximately 85% through predation or behavioural avoidance. Consequently, physical predator exclusion is mandatory for accurate mysid sampling. Generalized Linear Mixed Models (GLMMs) confirmed that catch rates for all taxa were primarily driven by night duration rather than water temperature. While passive benthic trap catches tracked metabolic activity (peaking in warm summer months), light trap efficiency peaked in spring and collapsed during summer, confirming that sampling efficiency was strictly limited by the short duration of the night. Simulation-based power analysis revealed a stark contrast in monitoring utility based on spatial aggregation. For highly aggregated mysids, the method demonstrated low precision (Power < 0.25 to detect a 50% decline), rendering it suitable primarily for detecting substantial population collapses (>90%). In contrast, for less aggregated sticklebacks, the method achieved a more robust statistical power (>0.80 for a 60% decline), validating light traps as a precise tool for monitoring these abundant mesopredators. We conclude that light traps fill a critical methodological gap for winter and early spring monitoring when traditional passive gears underperform. Appropriate abundance indices should be based on statistical models accounting for night duration and strictly employ physical exclusion barriers when targeting mysids.

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Navigating the salinity gradient: Individual variation in habitat use and migration of European eel revealed by otolith microchemistry

Jacobson, P.; Spotowitz, L.; Heimbrand, Y.; Myrenas, E.; Gemert, R. v.; Sundin, J.

2026-06-25 ecology 10.64898/2026.06.24.734179 medRxiv
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Knowledge regarding variation in habitat use among individuals is crucial for understanding population dynamics and for management and conservation measures. This is especially important for diadromous fishes that shift between habitats, being affected by external pressures and environmental change in different habitats over ontogeny. Herer, we assessed individual variation in habitat use of European eel along a salinity gradient, ranging from fully marine to freshwater in northern Europe, using otolith microchemistry data from >3600 eel together with established time-series segmentation and clustering methods. We show that eel display high degree of individual variation in habitat use. Assigned life-histories included coastal resident, freshwater resident, and coastal and freshwater habitat shifting individuals. Coastal resident eels were observed in a large range of salinities. Given the widespread occurrence of migration barriers in freshwater, it is unknown whether the coastal resident eel preferred that habitat, or if it was the only available habitat for them. Our findings nonetheless highlight the need to include coastal habitats when assessing population development and silver eel production of the critically endangered European eel.

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200 years of river engineering: changes in meta-ecosystem resilience and connectivity

Kowal, J. L.; Gross, S.; Haidvogl, G.; Hein, T.; Hohensinner, S.; Funk, A.

2026-07-03 ecology 10.64898/2026.07.03.736339 medRxiv
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This study investigates changes in habitat connectivity and meta-ecosystem resilience between 1817 and 2022 along a 150 km section of a large European river (Danube) and its adjacent floodplains. The analysis was based on a time series of functional habitat networks (graphs) constructed from historical records and remote sensing data, integrating habitat suitability and dispersal modes of functional organism groups. The results indicate that overall habitat availability declined by about 50% since 1817, leading to the near-complete loss of functional connectivity among dynamic habitats by 1910. Less dynamic habitats persisted or expanded but became functionally less connected. Connectivity-based habitat classification further revealed four distinct functional connectivity clusters and the near-complete loss of an originally dominant, dynamic, and highly connected habitat type. Furthermore, the results indicated a fundamental loss of meta-ecosystem resilience. This development was reflected by increased spatial modularity among functionally similar habitats and by reduced layer dissimilarity and structural robustness in multilayer networks representing the spatial habitat structure and functional habitat connectivity across different functional organism groups.

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Relationship between gonadosomatic index and spawning-capable status based on gonadal histology in the moonfish Mene maculata

Oi, M.; Ogawa, C.; Fujii, K.; Mori, T.; Matsuo, S.; Fukuda, K.

2026-07-14 ecology 10.64898/2026.07.12.738070 medRxiv
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The moonfish Mene maculata (Bloch and Schneider, 1801), the sole extant species of the family Menidae, is widely distributed in the Indo-West Pacific. Although its spawning season has previously been inferred from seasonal variation in the gonadosomatic index (GSI), the histological basis for interpreting GSI as an indicator of spawning-capable status remains limited. Here we describe the gonadal structure of male and female M. maculata and evaluate how GSI and standard length relate to spawning-capable status based on germ cell development. The testis was lobular and exhibited an unrestricted spermatogonial distribution, a structure widely observed among neoteleosts, indicating that the phylogenetic distinctiveness of M. maculata was not associated with a distinctive testicular structure. In the spawning-capable female, oocytes at multiple developmental stages, from primary growth to oocyte maturation, co-occurred within the ovary, indicating asynchronous ovarian development. This finding suggests that M. maculata may be a batch spawner rather than a total spawner as previously inferred. The spawning-capable female had a GSI consistent with previously inferred spawning season estimates. By contrast, histologically examined males were spawning capable at GSI values lower than those previously associated with the inferred spawning season, suggesting that male spawning-capable status may persist beyond the period inferred from elevated GSI alone. This study provides the first histological description of reproductive biology in the phylogenetically distinctive M. maculata and establishes a histological basis for interpreting GSI as a reproductive indicator.

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Coral settlement module designs for scalable reef restoration

Reichert, J.; Asbury, M.; Argall, R.; Chen, G. K.; Ehrenberg, J.; Huang, Z.; Jones, B.; Jorissen, H.; Levy, J.; Nims, A. D.; Rottmueller, M. E.; Rova, L. H.; Thode, A.; Wangpraseurt, D.; The R3D Consortium, ; Madin, J. S.

2026-06-25 ecology 10.64898/2026.06.24.733534 medRxiv
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The global coral reef crisis has prompted restoration initiatives worldwide. Targeting the coral larval stage is among the most scalable approaches as recruitment operates over large spatial scales. It thus represents one of the best levers for coral population recovery. Active coral larval seeding has shown considerable success, and passive substrate engineering has emerged as a promising complementary strategy. Coral settlement modules featuring helix recesses have increased settlement and survival by up to 80-fold on small experimental units, but whether these results translate to tools deployable at the scale of thousands of units, remains yet an open question. Here, we transferred structural features from successful experimental coral settlement designs into production-ready concrete modules to (i) evaluate coral recruitment on five designs at four reef sites differing in flow regime and coral cover over one year; (ii) compare production-scale performance against experimental clay modules and natural reef substrate; and (iii) identify key parameters for large-scale production. The helix recess geometry of coral settlement modules outperformed the featureless control design approximately 20-fold and exceeded natural reef recruitment at least 3- to 32-fold. The helix features were successfully transferred from experimental clay to production-scale concrete modules, yielding comparable settlement densities when standardized to crevice length, which proved to be the biologically relevant unit of available habitat. Production feasibility was demonstrated by producing 690 modules for deployment on a hybrid reef on the west side of Oahu, Hawaii. The passive coral larval recruitment approach presented here could substantially improve the logistical and economic feasibility of large-scale coral reef restoration. This approach requires neither coral larval rearing, handling, nor coral fragmenting, and is compatible with active larval seeding where genetic diversity or larvae supply are limiting factors. The coral settlement modules can be cast in standardized concrete molds at precast facilities. Modules have demonstrated consistent coral recruitment enhancement across reef environments with contrasting flow and coral cover. Deploying mixed arrays of helix-recess structures with designs offering multi-level complexity and three-dimensional rugosity maximizes outcomes for coral, fish, and invertebrate communities simultaneously. Site selection is the most critical deployment decision and should consider larval supply, hydrodynamics, and substrate stability which drive recruitment outcomes more than design choice alone. The modules offer a range of application potential, ranging from integration into existing coastal infrastructure over stand-alone reef restoration approaches, to substrate-consolidating interconnected arrangements.

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Lessening the bottleneck: reduced spatiotemporal overlap between krill fishing vessels and post-fledging chinstrap penguins led to increased apparent survival

Kruger, L.; Santa Cruz, F.; Marquez, M.; Vianna, J. A.; Santos, M.; Pinones, A.; Cardenas, C.

2026-06-23 ecology 10.64898/2026.06.22.733719 medRxiv
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Fledging is a critical period of a seabird life cycle. Using satellite telemetry, we compared movements and survival proxies (transmission duration) of chinstrap penguin fledglings tracked in 2017 (n=8) and 2025 (n=17) relative to krill fishing vessel activity. In 2017, fishing vessels operated intensively near colonies during summer, resulting in early, frequent encounters (median 1.3 days post-fledging) and short transmission durations (median 9.2 days). In 2025, reduced fishing delayed encounters (median 10.0 days) and tripled tracking duration (median 24.0 days). Hidden Markov Models revealed that vessel encounters reduced the probability of transitioning from foraging to transit behavior ({beta} = -0.76), an effect stronger than the productivity ({beta} = -0.11). While 87.5% of 2017 fledglings ceased transmission prematurely within weeks (half of those right after entering areas intensively used by fishing vessels), 65% of 2025 fledglings survived beyond March, with half of those five transmitting until May after dispersing eastward to the South Orkney Islands. These findings suggest that spatiotemporal overlap with krill fisheries during the critical post-fledging window affected foraging behavior and was associated with shorter transmission durations. Our results support further research of post-fledging penguin ecology to better understand the potential impact of fishery, and, following the precautionary principle, support fishing seasonal protection of important areas during critical periods of krill predators life cycle.

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The effects of estrogen exposure on survival, growth, and fecundity of Daphnia magna

Boyle, S.; Schaack, S.

2026-07-02 pharmacology and toxicology 10.64898/2026.06.27.734946 medRxiv
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High concentrations of steroidal hormone compounds are a growing source of concern for environmental pollution in aquatic ecosystems. In this study, we examine the effects of two estrogenic compounds (estriol and 17-ethinylestradiol) on fitness traits in the aquatic microcrustacean, Daphnia magna, a key bioindicator species for toxicology studies. The impacts were compared of two forms representing a natural and synthetic estrogenic compound. Growth and reproduction traits were assayed by exposing Daphnia to each estrogen type at four concentrations reflecting potential environmental exposure conditions up to acute toxicity levels (ranging from 0.1 - 50 {micro}g/L). Assaying the effects at a variety of concentrations is important given that it is known that hormone exposures can often result in non-monotonic responses. Both forms of estrogen impact a subset of the traits assessed, in some cases leading to beneficial changes and others causing harm. Estriol, the naturally-occurring estrogen, and EE2, the synthetic version, at high doses shift fitness traits in opposite directions such as adult growth rate as do at low doses for fecundity. In conclusion, our results support the need to assay a wide array of traits using multiple forms of steroidal hormones at a range of doses in order to assess non-monotonic patterns and their impact on an organismal fitness. In particular, assays that extend beyond the conventional measurements of lethality during acute exposure windows will be essential for understanding the impact of increased levels of hormone pollution on aquatic organisms and ecosystem health.

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From strandline vegetation to embryo dunes: natural sand retention along a heavily urbanized coast

Taelman, C.; Provoost, S.; Batsleer, F.; Bonte, D.; Van Uytvanck, J.

2026-07-15 ecology 10.64898/2026.07.14.738448 medRxiv
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1. Sandy beaches along urbanized coasts are increasingly managed through beach nourishment and hard infrastructure, yet these interventions often constrain natural dune-building processes. Along the Belgian coast, where much of the beach-dune interface is bordered by dikes, promenades and intensive recreation, strandline vegetation may provide an overlooked mechanism for retaining sand and initiating embryo dune development. 2. We assessed the potential for four pioneer dune plant species (Cakile maritima, Calamagrostis arenaria, Elymus farctus and Salsola kali) to establish, develop vegetation cover and contribute to sand accumulation along the Belgian coast. Using field surveys from 2017-2023, LiDAR-derived beach elevation and annual sediment dynamics, we modelled species occurrence and abundance/cover in low-disturbance reference zones and projected these relationships across the wider coastline. 3. Occurrence models identified where abiotic conditions allow plants to establish and persist until the late growing season, whereas zero-inflated abundance/cover models estimated expected vegetation development across environmental gradients. Predicted occurrence was widespread for several species, suggesting that the abiotic gradients modelled here are not the primary constraints on potential establishment across large parts of the coast. In contrast, expected abundance/cover showed stronger species-specific responses, particularly to sand accretion, indicating that sediment dynamics mainly affect post-establishment vegetation development rather than occurrence alone. 4. Independent field measurements of embryo dunes showed positive relationships between vegetation cover and local sand accumulation for all four species. When scaled using spatial predictions of potential abundance/cover, pioneer vegetation could retain substantial volumes of sand, with Cakile maritima contributing the largest share, followed by Salsola kali, Elymus farctus and Calamagrostis arenaria. Estimated volumes depended on assumptions about whether vegetation occurs as dispersed units or aggregated patches. 5. Synthesis and applications. Our results show that, even along a heavily urbanized and nourished coastline, abiotic conditions can support strandline vegetation and embryo dune initiation where disturbance is reduced. Management actions such as limiting trampling, adapting beach cleaning and protecting strandline vegetation could enhance the retention of nourished sand and support nature-based coastal defense. Rather than replacing engineered interventions, strandline vegetation may increase the efficiency with which available sediment is retained within the beach-dune system.

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Testing the waters of macrophyte biodiversity with multiscale spatial analysis of public lake monitoring data

Tseitlin, M.; Garcia-Giron, J.; Crabot, J.; Jiang, X.; Larkin, D. J.

2026-06-23 ecology 10.64898/2026.06.22.733670 medRxiv
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Freshwater monitoring programmes like the European Unions Water Framework Directive (WFD) provide a wealth of data on European lake status, including water quality and macrophytes (aquatic plants) as critical habitat features that support health of humans and wildlife. Easier WFD data access can enable external management and research to better safeguard human and natural freshwater use. We demonstrate a replicable workflow to easily download and process multi-year (2007-2024) observations of lake macrophytes (425 sites) and complementary water quality variables (202 sites) from Swedish WFD data. Then, we illustrate the value of improved data access to address ecological questions that drive conservation, investigating how spatial scales influence macrophyte richness and associated water quality relationships using a spatial random intercept model. Decomposing the spatial intercept links small scales (<10 km) to site-level gradients and large scales (>100 km) to biogeographical drivers. Stochastic and environmentally-structured processes coexisted at intermediate scales (10-100 km). Adding water quality rarely improved overall predictive performance of macrophyte diversity models but consistently influences the role of different spatial scales. Water quality variables showed consistent spatially structured variation at intermediate scales and unique spatial patterns in tandem, overlapping with large-scale biogeographical influences. Altogether, we show context-dependencies for spatial model interpretation and provide guidance in accounting for spatial confounding to improve inferential and predictive performance. Our workflow and results show a clear way forward for accessing high-quality macrophyte and water quality data sets and their utility for addressing ecological questions that guide macrophyte protection under the WFD. HighlightsO_LIyears Swedish of macrophyte and water quality monitoring data were extracted. C_LIO_LIrichness showed scale-specific patterns linked to geographic gradients. C_LIO_LIbest predictive models for richness had no water quality at all. C_LIO_LIoverlap in their spatial scales and must be carefully separated. C_LIO_LIpen access data and multiscale analysis can apply to many ecological questions. C_LI

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Small stream restoration increases habitat and plant diversity across scales

Lerbs, L.; Singer, A.; Dotzert, A.; Grunwald, L.; Lampe, J.; Farwig, N.; Liepelt, S.; Willems, F. M.; Pinkert, S.; Bucharova, A.

2026-06-24 ecology 10.64898/2026.06.23.733988 medRxiv
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A majority of stream restoration efforts in central Europe focus on streams that are less than five meters wide. Restoration aims to increase structural complexity, thereby enhancing habitat heterogeneity, promoting biodiversity, and reestablishing aquatic-terrestrial linkages that can drive responses in adjacent terrestrial communities. However, the effects of small stream restoration on terrestrial biodiversity remain poorly understood because research focuses mainly on large rivers. Here, we investigated the effects of restoration on the structural complexity of the stream channel as well as the terrestrial habitat and plant diversity on a local and landscape scale across 55 small streams in an agricultural landscape. We compared restored stream sections with non-restored ones that were similar to the conditions before restoration. We also assessed how restored sections changed over time since restoration. Restored stream sections showed a higher stream structural complexity and habitat diversity, both of which are targets of active restoration measures. Restoration also increased riparian plant diversity, both directly and indirectly through structural complexity and habitat diversity. Although time since restoration did not influence structural complexity, it drove successional changes in plant communities that became increasingly associated with wetland habitat conditions. Our results demonstrate that small stream restoration effectively increases floodplain habitat and plant diversity in agricultural landscapes, primarily by enhancing water availability in the floodplain. Restoration actions on small streams support biodiversity if they improve stream channel complexity, connect the stream with its floodplain, and create floodplain habitats.

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Rapid shallow-water saturation and deep-water expansion of an invasive freshwater ecosystem engineer in a deep European lake

Hofstetter, L.; Mueller, T. M.; Bourqui, M.; Burlakova, L. E.; Cristante, Z. C.; Karatayev, A. Y.; Kessler, S.; Narwani, A.; Santos, J. L.; Sturm, L.; Wellauer, N.; Spaak, P.; Weber, A. A.-T.

2026-06-27 ecology 10.64898/2026.06.26.734794 medRxiv
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Quagga mussels (Dreissena rostriformis bugensis) are ecosystem engineers that can alter nutrient cycling, benthic-pelagic coupling, and food-web structure in deep lakes. Although their invasion trajectories are well documented in the Laurentian Great Lakes in North America, depth-specific population dynamics remain poorly resolved in recently invaded European perialpine lakes. We analyzed five annual lake-wide surveys (2021-2025) from 54 stations spanning 2.4-253 m depth in Lake Constance to quantify changes in quagga mussel density, biomass, and shell-length distribution. Contrary to expectations of lake-wide exponential growth, shallow-water populations (< 20 m) showed no significant increase during the study period and appear to have reached carrying capacity before monitoring began. In contrast, densities increased monotonically at intermediate depths (40-125 m), indicating ongoing expansion into deeper strata. Mean shell length declined with depth, and size distributions in shallow waters shifted toward larger individuals, consistent with a transition from active recruitment to somatic growth of established mussels. Compared with the Laurentian Great Lakes, Lake Constance already has substantially higher shallow-water biomass, whereas deeper invasion trajectories are broadly similar. These results show that quagga mussel invasion in deep European lakes can combine rapid littoral saturation with slower profundal expansion, complicating direct transfer of predictions from the Great Lakes. Continued depth-stratified monitoring will be essential for anticipating future ecosystem effects in perialpine lakes.

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Northward expansion of the barnacle Fistulobalanus albicostatus in Japan

Tamechika, M. M.; Shahdadi, A.; Chan, B. K. K.

2026-07-06 ecology 10.64898/2026.07.06.736396 medRxiv
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Fistulobalanus albicostatus Pilsbry, 1916 (Thoracica: Balanidae) is a tropical to temperate species distributed in the NW Pacific. The previously known northernmost record of this species in Japan was from Aomori Prefecture, at the northern end of Honshu Island, Japan. However, field surveys conducted in 2023 and 2026 confirmed the occurrence of F. albicostatus in Hakodate Bay, the southern end of Hokkaido, Japan, across the Tsugaru Strait, thereby extending the northern limit of its known distribution. A line transect survey conducted in May 2026 recorded seven living individuals within an area of 128 m. F. albicostatus was rare on the mid-high shores, accounting for only 2% of all barnacle individuals in a quadrat survey. The basal diameter of the living individuals ranged from 0.76 to 1.23 cm, and all individuals possessed ovaries. Based on characteristics of both morphological and COI gene, the specimens were identified as F. albicostatus, and belonged to the same haplotype of populations that are present in Honshu Island. The establishment of F. albicostatus in Hokkaido suggests an ongoing northward range shift of this warm-water species, with the potential for further expansion under continued ocean warming.

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Short term effects of salinization on the plankton community of an oligotrophic mountain lake

Ptacnik, R.; SalInvade group, lead by Izabele Suikate, ; PP-TOX group, lead by Elisabeth Varga,

2026-07-13 ecology 10.64898/2026.07.10.737327 medRxiv
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Freshwater salinization is of increasing concern for integrity and functioning of freshwater habitats worldwide. Experiments so far often have studied drastic salt additions, while gradient designs have been performed less commonly. We tested the effect of freshwater salinization in a mesocosm exposing the plankton community of the oligotrophic Lake Lunz, Austria, to a four-fold salinization gradient (control, 0.2, 1, a 5 ppt salt). Salinity was manipulated in a factorial design with enrichment, with 10 g L-1 and 30 g L-1 phosphorus, resulting in 8 treatments with 3 replicates each. We followed the effects of salinization on diversity, community composition and resource use over 36 days. Community composition was assessed by amplicon sequencing, Diversity loss and community turnover followed upon salt addition. All levels of salinization caused pronounced changes in community composition, with 5 ppt causing the most drastic changes. Salinization caused trophic downgrading by kicking out especially protistan consumers and rotifers, while some green algae and chrysophytes were especially tolerant, resulting in reduced phylogenetic and functional diversity with increasing salinization. In line with reduced top down control, salinization affected temporal variability in chlorophyll-a (chl-a) and resource use (RUE), with higher salinity causing more extreme fluctuations in chl-a and RUE. Enrichment overall aggravated salinization, enhancing temporal turnover and temporal fluctuations in resource use.

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Systematic revision of the suborder Astrophorina (Porifera: Demospongiae) in the temperate Northeast Pacific

Turner, T. L.

2026-06-26 zoology 10.64898/2026.06.22.733819 medRxiv
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This study presents a systematic revision of the suborder Astrophorina for the temperate Pacific coast of the United States and Canada. Major findings include a reduction in the number of species previously thought to range into the region from Japan; validation of most Geodia species erected by Lendenfeld (1910), which were later synonymized by de Laubenfels (1932); the formal description of 10 new species (Poecillastra alaskensis sp. nov., Vulcanella explorata sp. nov., Vulcanella rupta sp. nov., Stelletta cardenasi sp. nov., Stelletta nicolenya sp. nov., Stelletta limuwensis sp. nov., Dercitus (Stoeba) giveni sp. nov., Penares anyapax sp. nov., Penares foxi sp. nov., and Thenea diastra sp. nov.); and one new combination, Penares orientalis comb. nov. Extensive SCUBA-based collection efforts yielded new samples for 11 of the 26 species identified in the region, which enabled an integrative taxonomic approach that combined field photography, fresh material for DNA sequencing, and improved characterization of species ranges and morphological variability in previously described taxa. Illumina sequencing generated complete nuclear ribosomal haplotypes for five species, while Sanger sequencing of the 28S and cox1 loci placed 20 of the 26 species within molecular phylogenies. The use of very short "mini-barcode" amplicons also enabled sequence recovery from historic type specimens up to 137 years old. This study additionally reports the discovery of sponge grounds of abundant, large Geodia at diving depths in Southern California. Together, these results substantially advance our understanding of global astrophorid diversity and systematics, and the biogeography of sponge diversity in the Northeast Pacific. Note about species names: this pre-print is not intended to be a publication of the associated species names for the purposes of zoological nomenclature.